The Master level of education program in Widya Mandala Catholic University Surabaya was first established by opening the Master of Management Study Program with the concentration in Strategic Management. It was officially opened through the letter of commandment by the Director General of Higher Education at the Education and Culture Department with the reference number: 196/DIKTI/Kep/1999, dated April 30, 1999. In 2004, the Master of Management Study Program conducted review and developing a new concentration, Financial Management. This new concentration is to answer the global challenge demanding financial expertise in managing risk, proper capital structure, hedging efforts toward the capital asset that moves dinamically across country boundaries. On June 3 of 2011, the Master of Management study program was accredited by BAN-PT (the government) with the reference number: 001/BAN-PT/Ak-IX/S2/VI/2011.
In an attempt to answer the increasing need for competent English teachers, the Graduate Program opened a Master of English Education Study Program through the letter of commandment from the Director General of Higher Education at the Nasional Education Department with the reference number: 385/Dikti/Kep/2000, dated November 7, 2000. Then, on August 18, 2011, the Master of English Education study program was accredited by BAN-PT with reference number: 012/BAN-PT/Ak-IX/S2/VIII/2011..
With the large number of graduates and requests from those graduates for a higher edcuation, the Graduate School of Widya Mandala Catholic University Surabaya finally established a Doctoral Program in Management Education. The Management Education Doctoral Program started its first class on July 6, 2009. Then, on January 4, 2013, the Management Education Doctoral Program was accredited by BAN-PAT with reference number: 007/SK/BAN-PT/Ak-X/D/I/2013.